WSDL file: "web/wsdl/iHOP-SOAP.wsdl"

Target namespace: http://www.pdg.cnb.uam.es/UniPub/iHOP/xml

Overview:

Services
iHOP_SOAP
Bindings
iHOP_SOAP_Binding
Port types
iHOP_SOAP_PortType
Messages
getPubMedFromPMIDRequest, getPubMedFromIHOPRequest, getPubMedResponse, getRelatedSymbolsRequest, getRelatedSymbolsWithTaxIdRequest, getRelatedSymbolsResponse, guessSymbolIdFromSymbolTextResponse, referenceRequest, symbolRequest, symbolAndTaxIdRequest, iHOPRequest, getSymbolDefinitionsResponse, getSymbolInfoResponse, getSymbolInteractionsResponse, getLatestSymbolInformationResponse,

WSDL Definition
Name Documentation
iHOP_SOAP_1.1 iHOP SOAP services, described in WSDL It uses XML export schema designed for ORIEL Funded by ORIEL project (IST-2001-32688)

Services
Name Documentation
iHOP_SOAP
iHOP SOAP services It uses XML export schema designed for ORIEL Funded by ORIEL project (IST-2001-32688)


Service : iHOP_SOAP
Port Name Binding Address Extensibility Documentation
iHOP_SOAP_Port iHOP_SOAP_Binding <soap:address location="http://ubio.bioinfo.cnio.es/biotools/iHOP/cgi-bin/iHOPSOAP"/>
N/A


Binding : iHOP_SOAP_Binding
Port Type iHOP_SOAP_PortType
Extensibility <soap:binding style="rpc" transport="http://schemas.xmlsoap.org/soap/http"/>
Operations getPubMedFromPMID, getPubMedFromIHOP, getRelatedSymbols, getRelatedSymbolsWithTaxId, getSymbolsFromReference, guessSymbolIdFromSymbolText, guessSymbolIdFromSymbolTextAndTaxId, guessSymbolIdFromReference, getSymbolDefinitionsFromSymbol, getSymbolDefinitionsFromSymbolAndTaxId, getSymbolDefinitionsFromReference, getSymbolDefinitionsFromIHOP, getSymbolInfoFromSymbol, getSymbolInfoFromSymbolAndTaxId, getSymbolInfoFromIHOP, getSymbolInfoFromReference, getSymbolInteractionsFromSymbol, getSymbolInteractionsFromSymbolAndTaxId, getSymbolInteractionsFromIHOP, getSymbolInteractionsFromReference, getLatestSymbolInformationFromSymbol, getLatestSymbolInformationFromSymbolAndTaxId, getLatestSymbolInformationFromIHOP, getLatestSymbolInformationFromReference,


Port Type : iHOP_SOAP_PortType
Operation Name Input message Output message Documentation
getPubMedFromPMID getPubMedFromPMIDRequest getPubMedResponse
It takes a PMID, and it returns the associated abstract if it exist and it is inside iHOP.
getPubMedFromIHOP getPubMedFromIHOPRequest getPubMedResponse
It takes an iHOP publication id, and it returns the associated abstract if it exist and it is inside iHOP.
getRelatedSymbols getRelatedSymbolsRequest getRelatedSymbolsResponse
It takes a putative gene symbol as input. It returns a XML with the list of iHOP symbols which could best fit with the input.
getRelatedSymbolsWithTaxId getRelatedSymbolsWithTaxIdRequest getRelatedSymbolsResponse
It takes a putative gene symbol and an NCBI Tax ID as input. It returns a XML with the list of iHOP symbols which could best fit with the input and are attached to the organism specified.
getSymbolsFromReference referenceRequest getRelatedSymbolsResponse
It takes a biological database reference as input. It returns a XML with the list of iHOP symbols which could best fit with the input.
guessSymbolIdFromSymbolText getRelatedSymbolsRequest guessSymbolIdFromSymbolTextResponse
It takes a putative gene symbol as input. It guess the iHOP Id which best matches with the input.
guessSymbolIdFromSymbolTextAndTaxId getRelatedSymbolsWithTaxIdRequest guessSymbolIdFromSymbolTextResponse
It takes a putative gene symbol and an NCBI Tax ID as input. It guess the iHOP Id which best matches with the input.
guessSymbolIdFromReference referenceRequest guessSymbolIdFromSymbolTextResponse
It takes a biological database reference as input. It guess the iHOP Id which best matches with the input.
getSymbolDefinitionsFromSymbol symbolRequest getSymbolDefinitionsResponse
It takes a gene symbol, and it returns the definitions iHOP used to model this gene symbol. Input gene symbol is matched against the list of related iHOP gene symbols, taking the first one which is equal.
getSymbolDefinitionsFromSymbolAndTaxId symbolAndTaxIdRequest getSymbolDefinitionsResponse
It takes a gene symbol and an NCBI TaxID, and it returns the definitions iHOP used to model this gene symbol. Input gene symbol is matched against the list of related iHOP gene symbols, taking the first one which is equal.
getSymbolDefinitionsFromReference referenceRequest getSymbolDefinitionsResponse
It takes a biological database reference, and it returns the definitions iHOP used to model this gene symbol.
getSymbolDefinitionsFromIHOP iHOPRequest getSymbolDefinitionsResponse
It takes an iHOP gene symbol id, and it returns the definitions iHOP used to model this gene symbol.
getSymbolInfoFromSymbol symbolRequest getSymbolInfoResponse
It takes a gene symbol, and it returns the information about it inside iHOP. Input gene symbol is matched against the list of related iHOP gene symbols, taking the first one which is equal.
getSymbolInfoFromSymbolAndTaxId symbolAndTaxIdRequest getSymbolInfoResponse
It takes a gene symbol and an NCBI TaxID, and it returns the information about it inside iHOP. Input gene symbol is matched against the list of related iHOP gene symbols, taking the first one which is equal.
getSymbolInfoFromReference referenceRequest getSymbolInfoResponse
It takes a biological database reference, and it returns the information about it inside iHOP.
getSymbolInfoFromIHOP iHOPRequest getSymbolInfoResponse
It takes an iHOP gene symbol id, and it returns the information about it inside iHOP.
getSymbolInteractionsFromSymbol symbolRequest getSymbolInteractionsResponse
It takes a gene symbol, and it returns the interactions of the symbol with other ones (in terms of experimental evidences and sentences). Input gene symbol is matched against the list of related iHOP gene symbols, taking the first one which is equal.
getSymbolInteractionsFromSymbolAndTaxId symbolAndTaxIdRequest getSymbolInteractionsResponse
It takes a gene symbol and an NCBI Tax ID, and it returns the interactions of the symbol with other ones (in terms of experimental evidences and sentences). Input gene symbol is matched against the list of related iHOP gene symbols, taking the first one which is equal.
getSymbolInteractionsFromReference referenceRequest getSymbolInteractionsResponse
It takes a biological database reference, and it returns the interactions of the symbol with other ones (in terms of experimental evidences and sentences).
getSymbolInteractionsFromIHOP iHOPRequest getSymbolInteractionsResponse
It takes an iHOP gene symbol id, and it returns the interactions of the symbol with other ones (in terms of experimental evidences and sentences).
getLatestSymbolInformationFromSymbol symbolRequest getLatestSymbolInformationResponse
It takes a gene symbol, and it returns the latest information about the symbol (in terms of experimental evidences and sentences). Input gene symbol is matched against the list of related iHOP gene symbols, taking the first one which is equal.
getLatestSymbolInformationFromSymbolAndTaxId symbolAndTaxIdRequest getLatestSymbolInformationResponse
It takes a gene symbol and an NCBI Tax ID, and it returns the latest information about the symbol (in terms of experimental evidences and sentences). Input gene symbol is matched against the list of related iHOP gene symbols, taking the first one which is equal.
getLatestSymbolInformationFromReference referenceRequest getLatestSymbolInformationResponse
It takes a biological database reference, and it returns the latest information about the symbol (in terms of experimental evidences and sentences).
getLatestSymbolInformationFromIHOP iHOPRequest getLatestSymbolInformationResponse
It takes an iHOP gene symbol id, and it returns the latest information about the symbol (in terms of experimental evidences and sentences).


Messages:



getPubMedFromPMIDRequest

Documentation :

N/A

Part Name Element Type Documentation
pmid N/A xsd:int
Input parameter that indicates a PMID (PubMed identifier)



getPubMedFromIHOPRequest

Documentation :

N/A

Part Name Element Type Documentation
ihoppmid N/A xsd:int
Input parameter that indicates an iHOP publication id



getPubMedResponse

Documentation :

N/A

Part Name Element Type Documentation
result N/A tns:iHOPabstractSOAPContainer
Output parameter which contains a enriched abstract



getRelatedSymbolsRequest

Documentation :

N/A

Part Name Element Type Documentation
input N/A xsd:string
Input parameter that indicates the query (a piece of gene symbol, a UniProt gene name, etc...)



getRelatedSymbolsWithTaxIdRequest

Documentation :

N/A

Part Name Element Type Documentation
input N/A xsd:string
Input parameter that indicates the query (a piece of gene symbol, a UniProt gene name, etc...)
taxid N/A xsd:int
This parameter is an NCBI TaxID, and it restricts the search to the organism it represents



getRelatedSymbolsResponse

Documentation :

N/A

Part Name Element Type Documentation
result N/A tns:iHOPrelatedSymbolsSOAPContainer
Output parameter which contains the possible iHOP symbols by similarity search



guessSymbolIdFromSymbolTextResponse

Documentation :

N/A

Part Name Element Type Documentation
result N/A tns:iHOPguessedSymbolIdSOAPContainer
Output parameter which contains the nearest iHOP symbol ID by similarity search



referenceRequest

Documentation :

N/A

Part Name Element Type Documentation
reference N/A xsd:string
Input parameter that indicates the query (biological database reference)



symbolRequest

Documentation :

N/A

Part Name Element Type Documentation
symbol N/A xsd:string
Input parameter which should be a canonical symbol name



symbolAndTaxIdRequest

Documentation :

N/A

Part Name Element Type Documentation
symbol N/A xsd:string
Input parameter which should be a canonical symbol name
taxid N/A xsd:int
Input parameter which is an NCBI TaxId



iHOPRequest

Documentation :

N/A

Part Name Element Type Documentation
ihopid N/A xsd:int
Input parameter which is an iHOP symbol id



getSymbolDefinitionsResponse

Documentation :

N/A

Part Name Element Type Documentation
result N/A tns:iHOPdefinitionListSOAPContainer
Output parameter which contains the definitions that iHOP has used to caracterize a gene symbol



getSymbolInfoResponse

Documentation :

N/A

Part Name Element Type Documentation
result N/A tns:iHOPsymbolInfoSOAPContainer
Output parameter which contains the known information about the input gene symbol



getSymbolInteractionsResponse

Documentation :

N/A

Part Name Element Type Documentation
result N/A tns:iHOPinteractionListSOAPContainer
Output parameter which contains the identified interaction evidences between a given gene symbol and other ones



getLatestSymbolInformationResponse

Documentation :

N/A

Part Name Element Type Documentation
result N/A tns:iHOPLatestSentencesSOAPContainer
Output parameter which contains the latest evidences between a given gene symbol and other ones